Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
533
ChIP-seq
176
single cell RNA-seq
153
total RNA-seq
146
ATAC-seq
87
RNA microarray
40
pCHi-C
28
snATAC-seq
23
Hi-C
11
RRBS
11
WGBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
7
August, 2017
4
July, 2019
Available data
2
fastq
1
bam
Organism
21
Homo sapiens
Biosample type
primary cell
15
tissue
6
cell line
Organ
10
pancreas
6
epithelium
4
adipose tissue
4
connective tissue
4
liver
2
heart
1
blood vessel
1
vasculature
Project
21
AMP
Genome assembly (visualization)
GRCh38
Lab
11
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
21 results
search-icon
table-tab-icon
Clear Filters
WGBS
MeRIP-seq
tissue
islet of Langerhans
4
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
+ See 2 more…
cell line
EndoC_BH1
6
See all biosamples
Download