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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1403
total RNA-seq
489
ATAC-seq
354
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
58
WGBS
48
pCHi-C
29
Hi-C
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
58
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
41
May, 2022
7
August, 2017
6
February, 2021
4
July, 2019
4
November, 2020
Available data
41
zippedFastqFolder
18
bam
17
bed bedMethyl
bigBed bedMethyl
17
bigWig
17
fastq
6
tsv
Organism
62
Homo sapiens
Biosample type
47
primary cell
15
tissue
Organ
51
pancreas
47
epithelium
4
adipose tissue
4
connective tissue
4
liver
2
heart
1
blood vessel
1
vasculature
Project
47
HPAP
15
AMP
Lab
47
Klaus Kaestner, Upenn
11
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
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bigBed bedMethyl
BIOSAMPLE
ASSAY
62 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
islet of Langerhans
4
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
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