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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
0
MeRIP-seq
Assay category
60
DNA accessibility
47
DNA methylation
Date released
80
May, 2022
11
February, 2023
7
August, 2020
6
February, 2021
3
September, 2020
Available data
80
zippedFastqFolder
16
fastq
10
bigWig
6
tsv
Organism
107
Homo sapiens
Biosample type
96
primary cell
11
tissue
Organ
107
pancreas
96
epithelium
Project
AMP
96
HPAP
11
T1D
Genome assembly (visualization)
10
GRCh38
Lab
96
Klaus Kaestner, Upenn
11
Kyle Gaulton, UCSD
award.project!
AMP
BIOSAMPLE
ASSAY
107 results
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ATAC-seq
WGBS
primary cell
pancreatic alpha cell
29
31
pancreatic beta cell
16
16
pancreatic acinar cell
4
tissue
islet of Langerhans
11
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