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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
0
MeRIP-seq
Assay category
47
DNA methylation
4
3D chromatin structure
Date released
41
May, 2022
6
February, 2021
3
October, 2022
1
March, 2023
Available data
41
zippedFastqFolder
6
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
51
Homo sapiens
Biosample type
51
primary cell
Organ
50
epithelium
50
pancreas
Project
AMP
50
HPAP
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
50
Klaus Kaestner, Upenn
1
ITG
Audit category:
3
audit script error
award.project!
AMP
BIOSAMPLE
ASSAY
51 results
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WGBS
Hi-C
primary cell
pancreatic alpha cell
31
1
pancreatic beta cell
16
1
chondrocytes
1
pancreatic acinar cell
1
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