Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1397
total RNA-seq
476
ATAC-seq
275
single cell RNA-seq
212
DNase-seq
87
RNA microarray
57
pCHi-C
36
snATAC-seq
23
Hi-C
16
WGBS
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
5
January, 2018
Available data
16
fastq
14
bigWig
9
bam
9
bed bedMethyl
9
bigBed bedMethyl
Organism
31
Homo sapiens
Biosample type
19
tissue
7
cell line
4
in vitro differentiated cells
1
stem cell
Organ
14
pancreas
6
adipose tissue
6
connective tissue
6
epithelium
4
liver
2
spleen
1
embryo
Project
HPAP
31
AMP
Genome assembly (visualization)
9
GRCh38
5
hg18
Lab
21
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
award.project!
HPAP
month_released!
July, 2019
BIOSAMPLE
ASSAY
31 results
search-icon
table-tab-icon
Clear Filters
WGBS
MeRIP-seq
GRO-seq
tissue
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
+ See 2 more…
cell line
EndoC_BH1
6
HepG2
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
See all biosamples
Download