Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
468
ATAC-seq
212
DNase-seq
120
total RNA-seq
85
RNA microarray
73
single cell RNA-seq
36
snATAC-seq
31
Hi-C
28
WGBS
26
pCHi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
Transcription
28
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
47
September, 2023
12
July, 2019
10
November, 2020
9
April, 2020
9
August, 2017
8
August, 2021
8
November, 2018
3
May, 2023
1
December, 2019
1
February, 2021
1
February, 2023
1
May, 2022
1
September, 2018
Available data
tsv
118
bam
117
bigWig
105
fastq
17
bed bedMethyl
17
bigBed bedMethyl
13
txt
8
csv
Organism
111
Homo sapiens
Biosample type
102
tissue
7
cell line
2
primary cell
Organ
59
kidney
14
pancreas
9
heart
9
lung
6
adipose tissue
6
connective tissue
6
epithelium
6
liver
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
HPAP
55
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
17
GRCh38
Lab
47
KPMP
34
AMP-T2D consortium
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
6
inconsistent ontology term
award.project!
HPAP
files.file_type!
tsv
BIOSAMPLE
ASSAY
111 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
WGBS
MeRIP-seq
tissue
kidney
59
lung
9
heart left ventricle
4
islet of Langerhans
4
liver
1
3
+ See 12 more…
cell line
EndoC_BH1
6
HepG2
1
primary cell
pancreatic cell
2
See all biosamples
Download