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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
350
total RNA-seq
218
ChIP-seq
103
ATAC-seq
74
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
8
DNA accessibility
4
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
6
November, 2018
4
June, 2019
1
August, 2017
1
October, 2019
Available data
12
bam
12
bigWig
8
bed narrowPeak
8
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
7
fastq
4
bed bedMethyl
4
bigBed bedMethyl
Organism
22
Homo sapiens
Biosample type
15
tissue
7
cell line
Organ
81
kidney
38
heart
37
limb
34
musculature of body
32
brain
25
epithelium
22
pancreas
18
ureter
15
connective tissue
13
vasculature
11
blood vessel
11
liver
8
adipose tissue
4
artery
4
eye
3
spleen
2
nerve
2
vein
Project
HPAP
22
AMP
Genome assembly (visualization)
12
GRCh38
6
hg19
Lab
12
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
award.project!
HPAP
BIOSAMPLE
ASSAY
22 results
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MeRIP-seq
DNase-seq
WGBS
tissue
body of pancreas
4
2
islet of Langerhans
4
1
pancreas
2
2
cell line
EndoC_BH1
6
Panc1
1
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