Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
422
total RNA-seq
352
ChIP-seq
167
single cell RNA-seq
150
ATAC-seq
38
DNase-seq
12
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
4
RRBS
4
pCHi-C
3
small RNA-seq
2
Capture-C
2
FAIRE-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
12
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
8
July, 2019
4
November, 2018
Available data
10
bam
10
bed bedMethyl
10
bigBed bedMethyl
10
bigWig
4
fastq
Organism
22
Homo sapiens
Biosample type
16
tissue
6
cell line
Organ
14
pancreas
8
heart
6
adipose tissue
6
connective tissue
6
epithelium
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
HPAP
22
AMP
Genome assembly (visualization)
10
GRCh38
Lab
12
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
award.project!
HPAP
BIOSAMPLE
ASSAY
22 results
search-icon
table-tab-icon
Clear Filters
WGBS
MeRIP-seq
tissue
heart left ventricle
4
islet of Langerhans
4
body of pancreas
2
heart right ventricle
2
pancreas
2
+ See 2 more…
cell line
EndoC_BH1
6
See all biosamples
Download