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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
411
total RNA-seq
320
ChIP-seq
149
ATAC-seq
80
single cell RNA-seq
19
DNase-seq
11
Hi-C
11
snATAC-seq
10
MeRIP-seq
6
WGBS
3
FAIRE-seq
3
RRBS
2
Capture-C
2
pCHi-C
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
6
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
4
November, 2018
2
July, 2019
Available data
6
bam
5
bed bedMethyl
5
bigBed bedMethyl
5
bigWig
4
fastq
Organism
16
Homo sapiens
Biosample type
10
tissue
6
cell line
Organ
14
pancreas
8
heart
6
adipose tissue
6
connective tissue
6
epithelium
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
HPAP
16
AMP
Genome assembly (visualization)
5
GRCh38
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
6
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
award.project!
HPAP
BIOSAMPLE
ASSAY
16 results
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MeRIP-seq
WGBS
tissue
islet of Langerhans
4
aorta
2
body of pancreas
2
pancreas
2
cell line
EndoC_BH1
6
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