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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1420
total RNA-seq
1347
ChIP-seq
502
ATAC-seq
363
single cell RNA-seq
210
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
51
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
74
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
41
May, 2022
12
July, 2019
9
August, 2017
6
February, 2021
6
November, 2018
4
November, 2020
2
August, 2021
Available data
41
zippedFastqFolder
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
16
fastq
6
tsv
2
bed bed3+
Organism
80
Homo sapiens
Biosample type
47
primary cell
31
tissue
cell line
2
in vitro differentiated cells
Organ
55
pancreas
47
epithelium
8
connective tissue
8
heart
6
adipose tissue
4
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
33
AMP
Genome assembly (visualization)
16
GRCh38
2
hg19
Lab
47
Klaus Kaestner, Upenn
27
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
biosample_type!
cell line
BIOSAMPLE
ASSAY
80 results
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WGBS
MeRIP-seq
Capture-C
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 9 more…
in vitro differentiated cells
adipocyte
1
osteoblast
1
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