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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1552
ChIP-seq
1286
total RNA-seq
331
ATAC-seq
181
DNase-seq
176
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
176
Transcription
28
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
106
August, 2021
47
September, 2023
12
July, 2019
10
November, 2020
9
April, 2020
9
August, 2017
7
November, 2018
6
February, 2021
3
December, 2019
3
May, 2023
1
February, 2023
1
May, 2022
Available data
105
tsv
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
13
txt
11
fastq
6
csv
Organism
214
Homo sapiens
Biosample type
primary cell
205
tissue
7
cell line
2
in vitro differentiated cells
Organ
101
heart
64
kidney
14
pancreas
9
lung
8
blood vessel
8
vasculature
6
adipose tissue
6
connective tissue
6
epithelium
6
liver
2
artery
2
musculature of body
2
spleen
1
limb
Project
158
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
17
GRCh38
Lab
137
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
7
audit script error
biosample_type!
primary cell
BIOSAMPLE
ASSAY
214 results
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single cell RNA-seq
WGBS
MeRIP-seq
tissue
kidney
64
heart left ventricle
18
4
heart right ventricle
17
2
right cardiac atrium
18
1
left cardiac atrium
18
+ See 21 more…
cell line
EndoC_BH1
6
HepG2
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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