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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1552
ChIP-seq
1255
total RNA-seq
325
ATAC-seq
181
DNase-seq
176
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
snATAC-seq
20
Hi-C
16
WGBS
10
MeRIP-seq
5
GRO-seq
5
RRBS
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
Available data
11
fastq
9
bam
9
bed bedMethyl
9
bigBed bedMethyl
9
bigWig
Organism
26
Homo sapiens
Biosample type
primary cell
19
tissue
7
cell line
Organ
14
pancreas
6
adipose tissue
6
connective tissue
6
epithelium
4
liver
2
spleen
Project
26
AMP
Genome assembly (visualization)
9
GRCh38
Lab
16
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
biosample_type!
primary cell
month_released!
July, 2019
BIOSAMPLE
ASSAY
26 results
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WGBS
MeRIP-seq
tissue
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
+ See 2 more…
cell line
EndoC_BH1
6
HepG2
1
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