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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
0
MeRIP-seq
Assay category
247
Transcription
47
DNA methylation
Date released
76
February, 2023
55
May, 2021
47
May, 2020
41
May, 2022
26
September, 2018
16
September, 2020
13
July, 2019
7
February, 2021
5
December, 2019
4
November, 2020
2
October, 2018
2
October, 2019
Available data
156
tsv
152
bigWig
150
bam
126
fastq
41
zippedFastqFolder
2
bed bed3+
Organism
294
Homo sapiens
Biosample type
1068
tissue
294
primary cell
136
in vitro differentiated cells
120
cell line
Organ
140
epithelium
128
pancreas
10
connective tissue
6
kidney
5
liver
4
heart
2
artery
2
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
139
HPAP
96
T1D
59
AMP
Genome assembly (visualization)
152
hg19
150
GRCh38
Lab
139
Klaus Kaestner, Upenn
98
Kyle Gaulton, UCSD
57
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
294 results
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Clear Filters
total RNA-seq
WGBS
primary cell
pancreatic alpha cell
52
31
monocyte
54
exocrine cell
39
pancreatic beta cell
21
16
hepatocyte
5
osteoblast
5
CD8-positive, alpha-beta T cell
4
pancreatic acinar cell
4
pancreatic ductal cell
4
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
regulatory T cell
2
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
embryonic stem cell
1
endothelial cell of coronary artery
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
immature natural killer cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
mesangial cell
1
mesenchymal stem cell of adipose
1
myeloid dendritic cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell
1
neutrophil
1
pericardium fibroblast
1
plasma cell
1
plasmacytoid dendritic cell
1
renal cortical epithelial cell
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
smooth muscle cell of the coronary artery
1
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