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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1535
ChIP-seq
1444
total RNA-seq
526
ATAC-seq
363
single cell RNA-seq
207
DNase-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
57
pCHi-C
34
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
66
DNA methylation
18
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
30
July, 2019
10
November, 2020
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
34
bam
33
bigWig
24
tsv
15
bed bedMethyl
15
bigBed bedMethyl
13
fastq
Organism
94
Homo sapiens
Biosample type
49
primary cell
38
tissue
7
cell line
Organ
63
pancreas
53
epithelium
9
heart
5
liver
4
brain
3
adipose tissue
3
connective tissue
3
musculature of body
2
blood vessel
2
spleen
2
vasculature
1
kidney
1
limb
Project
47
AMP
47
HPAP
Genome assembly (visualization)
33
GRCh38
18
hg19
Lab
47
Klaus Kaestner, Upenn
37
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
94 results
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WGBS
small RNA-seq
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
body of pancreas
2
2
heart left ventricle
4
islet of Langerhans
4
right lobe of liver
1
2
aorta
2
+ See 17 more…
cell line
EndoC_BH1
6
HepG2
1
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