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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1331
total RNA-seq
1051
ChIP-seq
497
ATAC-seq
363
single cell RNA-seq
205
DNase-seq
87
RNA microarray
84
snATAC-seq
65
WGBS
51
pCHi-C
30
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
65
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
41
May, 2022
12
July, 2019
August, 2017
6
February, 2021
6
November, 2018
4
November, 2020
Available data
41
zippedFastqFolder
15
bam
14
bed bedMethyl
14
bigBed bedMethyl
14
bigWig
12
fastq
6
tsv
Organism
69
Homo sapiens
Biosample type
47
primary cell
22
tissue
cell line
Organ
55
pancreas
47
epithelium
8
heart
2
blood vessel
2
spleen
2
vasculature
1
limb
1
liver
1
musculature of body
Project
47
HPAP
22
AMP
Genome assembly (visualization)
14
GRCh38
Lab
47
Klaus Kaestner, Upenn
18
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
August, 2017
biosample_type!
cell line
BIOSAMPLE
ASSAY
69 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
aorta
2
body of pancreas
2
heart right ventricle
2
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