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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1535
ChIP-seq
1444
total RNA-seq
526
ATAC-seq
363
single cell RNA-seq
207
DNase-seq
87
RNA microarray
84
snATAC-seq
57
pCHi-C
51
WGBS
34
Hi-C
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
51
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
November, 2020
August, 2017
6
February, 2021
4
July, 2019
Available data
41
zippedFastqFolder
16
bam
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
13
fastq
6
tsv
Organism
61
Homo sapiens
Biosample type
47
primary cell
8
tissue
6
cell line
Organ
57
pancreas
53
epithelium
2
heart
1
blood vessel
1
liver
1
vasculature
Project
47
HPAP
14
AMP
Lab
47
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
4
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
August, 2017
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
61 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
islet of Langerhans
4
heart left ventricle
2
aorta
1
right lobe of liver
1
cell line
EndoC_BH1
6
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