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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1463
total RNA-seq
448
ATAC-seq
326
single cell RNA-seq
212
DNase-seq
87
RNA microarray
62
snATAC-seq
57
pCHi-C
26
Hi-C
22
WGBS
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
22
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
May, 2022
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
6
February, 2021
Available data
17
fastq
9
bam
9
bed bedMethyl
9
bigBed bedMethyl
9
bigWig
6
tsv
Organism
32
Homo sapiens
Biosample type
19
tissue
7
cell line
6
primary cell
Organ
20
pancreas
12
epithelium
6
adipose tissue
6
connective tissue
4
liver
2
spleen
Project
26
AMP
6
HPAP
Genome assembly (visualization)
9
GRCh38
Lab
16
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
6
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
month_released!
May, 2022
July, 2019
BIOSAMPLE
ASSAY
32 results
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WGBS
MeRIP-seq
tissue
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
+ See 2 more…
cell line
EndoC_BH1
6
HepG2
1
primary cell
pancreatic alpha cell
6
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