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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1466
total RNA-seq
485
ATAC-seq
363
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
57
WGBS
56
pCHi-C
Hi-C
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
57
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
November, 2020
7
August, 2017
6
February, 2021
3
July, 2019
Available data
41
zippedFastqFolder
17
fastq
16
bam
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
Organism
67
Homo sapiens
Biosample type
47
primary cell
14
tissue
6
cell line
Organ
57
pancreas
53
epithelium
4
adipose tissue
4
connective tissue
4
liver
2
heart
blood vessel
1
vasculature
Project
47
HPAP
20
AMP
Lab
47
Klaus Kaestner, Upenn
10
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
blood vessel
assay_title!
Hi-C
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
67 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
islet of Langerhans
4
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
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cell line
EndoC_BH1
6
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