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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
854
ChIP-seq
237
total RNA-seq
134
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
0
MeRIP-seq
Assay category
17
DNA methylation
12
DNA accessibility
Date released
16
November, 2018
7
August, 2017
6
February, 2021
Available data
216
bam
216
bigWig
200
bed narrowPeak
200
bigBed narrowPeak
197
bed broadPeak
197
bigBed broadPeak
195
bed bed3+
41
zippedFastqFolder
29
fastq
16
bed bedMethyl
16
bigBed bedMethyl
6
tsv
Organism
29
Homo sapiens
Biosample type
20
tissue
7
primary cell
1
cell line
1
in vitro differentiated cells
Organ
13
pancreas
6
epithelium
5
connective tissue
5
liver
4
adipose tissue
3
spleen
2
brain
Project
23
AMP
6
HPAP
Genome assembly (visualization)
20
GRCh38
12
hg19
Lab
23
AMP-T2D consortium
6
Klaus Kaestner, Upenn
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
29 results
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WGBS
DNase-seq
tissue
body of pancreas
2
2
adipose tissue
3
liver
1
2
spleen
2
1
brain
2
+ See 4 more…
primary cell
pancreatic alpha cell
6
skeletal muscle myoblast
1
cell line
HepG2
1
in vitro differentiated cells
adipocyte
1
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