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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1772
ChIP-seq
1466
total RNA-seq
485
ATAC-seq
363
single cell RNA-seq
203
DNase-seq
87
RNA microarray
84
snATAC-seq
57
WGBS
56
pCHi-C
29
Hi-C
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
57
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
63
May, 2022
33
February, 2021
16
January, 2021
10
April, 2020
10
November, 2020
7
August, 2017
6
August, 2021
3
July, 2019
2
February, 2023
1
August, 2022
Available data
62
zippedFastqFolder
44
fastq
16
bam
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
1
bed bed3+
1
txt
Organism
150
Homo sapiens
Biosample type
103
primary cell
42
tissue
6
cell line
Organ
68
pancreas
53
epithelium
10
lung
8
blood
8
bodily fluid
6
kidney
4
adipose tissue
4
connective tissue
4
liver
2
heart
blood vessel
1
musculature of body
1
vasculature
Project
95
HPAP
28
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
1
hg19
Lab
95
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
12
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
6
inconsistent ontology term
organ_slims!
blood vessel
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
151 results
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snATAC-seq
WGBS
MeRIP-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
7
4
lung
10
kidney
6
pancreas
4
liver
3
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cell line
EndoC_BH1
6
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