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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1663
ChIP-seq
1336
total RNA-seq
382
ATAC-seq
293
single cell RNA-seq
188
DNase-seq
86
RNA microarray
84
snATAC-seq
56
pCHi-C
26
WGBS
25
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
26
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
10
July, 2019
9
August, 2017
7
November, 2018
6
August, 2021
4
November, 2020
2
February, 2023
1
August, 2022
Available data
38
fastq
21
zippedFastqFolder
16
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
1
bed bed3+
1
txt
Organism
113
Homo sapiens
Biosample type
57
tissue
56
primary cell
1
cell line
Organ
72
pancreas
epithelium
10
lung
8
blood
8
bodily fluid
8
heart
6
adipose tissue
6
connective tissue
6
kidney
5
liver
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
48
HPAP
38
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
16
GRCh38
1
hg19
Lab
48
Klaus Kaestner, Upenn
28
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
29
audit script error
organ_slims!
blood vessel
epithelium
BIOSAMPLE
ASSAY
114 results
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snATAC-seq
WGBS
MeRIP-seq
tissue
islet of Langerhans
7
4
lung
10
kidney
6
pancreas
4
2
heart left ventricle
4
+ See 11 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cell line
HepG2
1
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