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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1342
total RNA-seq
443
ATAC-seq
348
single cell RNA-seq
199
DNase-seq
84
snATAC-seq
73
WGBS
47
pCHi-C
24
Hi-C
19
RRBS
18
small RNA-seq
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
41
May, 2022
10
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
4
November, 2020
Available data
41
zippedFastqFolder
17
fastq
16
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
Organism
77
Homo sapiens
Biosample type
47
primary cell
29
tissue
1
cell line
Organ
55
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
30
AMP
Genome assembly (visualization)
16
GRCh38
Lab
47
Klaus Kaestner, Upenn
26
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
inconsistent ontology term
organ_slims!
blood vessel
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
77 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 8 more…
cell line
HepG2
1
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