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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1713
ChIP-seq
1310
total RNA-seq
366
ATAC-seq
320
single cell RNA-seq
199
DNase-seq
62
snATAC-seq
47
pCHi-C
32
WGBS
24
Hi-C
19
RRBS
18
small RNA-seq
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
32
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
May, 2022
10
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
4
November, 2020
Available data
17
fastq
16
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
Organism
36
Homo sapiens
Biosample type
29
tissue
6
primary cell
1
cell line
Organ
14
pancreas
8
heart
6
adipose tissue
6
connective tissue
6
epithelium
5
liver
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
30
AMP
6
HPAP
Genome assembly (visualization)
16
GRCh38
Lab
26
AMP-T2D consortium
6
Klaus Kaestner, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
inconsistent ontology term
organ_slims!
blood vessel
audit.ERROR.category!
inconsistent ontology term
month_released!
May, 2022
BIOSAMPLE
ASSAY
36 results
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WGBS
MeRIP-seq
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 8 more…
primary cell
pancreatic alpha cell
6
cell line
HepG2
1
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