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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1732
ChIP-seq
1380
total RNA-seq
436
ATAC-seq
272
single cell RNA-seq
203
DNase-seq
87
RNA microarray
56
pCHi-C
36
snATAC-seq
26
Hi-C
26
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
26
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
10
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
Available data
16
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
11
fastq
Organism
36
Homo sapiens
Biosample type
29
tissue
7
cell line
Organ
14
pancreas
8
heart
6
adipose tissue
6
connective tissue
6
epithelium
5
liver
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
36
AMP
Genome assembly (visualization)
16
GRCh38
Lab
Klaus Kaestner, Upenn
26
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
blood vessel
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
36 results
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WGBS
MeRIP-seq
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 8 more…
cell line
EndoC_BH1
6
HepG2
1
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