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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1712
ChIP-seq
1472
total RNA-seq
484
ATAC-seq
357
single cell RNA-seq
202
DNase-seq
87
RNA microarray
84
snATAC-seq
71
WGBS
55
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
71
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
July, 2019
10
November, 2020
9
August, 2017
6
February, 2021
5
November, 2018
Available data
41
zippedFastqFolder
15
fastq
14
bam
14
bed bedMethyl
14
bigBed bedMethyl
14
bigWig
6
tsv
Organism
81
Homo sapiens
Biosample type
47
primary cell
27
tissue
7
cell line
Organ
61
pancreas
53
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
blood vessel
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
34
AMP
Genome assembly (visualization)
14
GRCh38
Lab
47
Klaus Kaestner, Upenn
24
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
blood vessel
spleen
BIOSAMPLE
ASSAY
81 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 7 more…
cell line
EndoC_BH1
6
HepG2
1
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