Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1752
ChIP-seq
1466
total RNA-seq
484
ATAC-seq
363
single cell RNA-seq
202
DNase-seq
87
RNA microarray
84
snATAC-seq
71
WGBS
55
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
71
DNA methylation
4
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
12
July, 2019
10
August, 2017
10
November, 2020
6
February, 2021
6
November, 2018
Available data
41
zippedFastqFolder
18
bam
18
bigWig
17
fastq
14
bed bedMethyl
14
bigBed bedMethyl
6
tsv
4
bed narrowPeak
4
bigBed narrowPeak
Organism
85
Homo sapiens
Biosample type
47
primary cell
31
tissue
7
cell line
Organ
63
pancreas
54
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
blood vessel
3
vasculature
spleen
1
brain
1
kidney
1
limb
1
musculature of body
1
vein
Project
47
HPAP
38
AMP
Genome assembly (visualization)
14
GRCh38
4
hg19
Lab
47
Klaus Kaestner, Upenn
28
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
blood vessel
spleen
BIOSAMPLE
ASSAY
85 results
search-icon
table-tab-icon
Clear Filters
WGBS
MeRIP-seq
FAIRE-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
islet of Langerhans
4
1
heart left ventricle
4
adipose tissue
3
liver
3
pancreas
2
1
+ See 9 more…
cell line
EndoC_BH1
6
HepG2
1
See all biosamples
Download