Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1411
ChIP-seq
822
total RNA-seq
308
ATAC-seq
178
DNase-seq
176
single cell RNA-seq
86
RNA microarray
37
pCHi-C
28
snATAC-seq
24
Hi-C
22
WGBS
14
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
22
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
12
July, 2019
10
November, 2020
7
November, 2018
3
August, 2017
Available data
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
8
fastq
Organism
32
Homo sapiens
Biosample type
primary cell
25
tissue
7
cell line
Organ
14
pancreas
8
heart
6
adipose tissue
connective tissue
6
epithelium
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
32
AMP
Genome assembly (visualization)
15
GRCh38
Lab
22
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
connective tissue
biosample_type!
primary cell
BIOSAMPLE
ASSAY
32 results
search-icon
table-tab-icon
Clear Filters
WGBS
MeRIP-seq
tissue
heart left ventricle
4
islet of Langerhans
4
liver
3
aorta
2
body of pancreas
2
+ See 7 more…
cell line
EndoC_BH1
6
HepG2
1
See all biosamples
Download