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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ATAC-seq
263
single cell RNA-seq
238
total RNA-seq
202
ChIP-seq
86
RNA microarray
84
snATAC-seq
53
WGBS
52
pCHi-C
33
Hi-C
20
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
53
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
November, 2020
6
February, 2021
3
August, 2017
3
July, 2019
Available data
41
zippedFastqFolder
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
14
fastq
6
tsv
Organism
63
Homo sapiens
Biosample type
47
primary cell
10
tissue
6
cell line
Organ
57
pancreas
53
epithelium
4
adipose tissue
connective tissue
4
liver
2
heart
Project
47
HPAP
16
AMP
Lab
47
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
6
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
connective tissue
files.file_type!
bam
BIOSAMPLE
ASSAY
63 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
islet of Langerhans
4
liver
3
heart left ventricle
2
right lobe of liver
1
cell line
EndoC_BH1
6
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