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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1670
ChIP-seq
963
total RNA-seq
489
ATAC-seq
341
single cell RNA-seq
203
DNase-seq
63
WGBS
57
snATAC-seq
51
pCHi-C
33
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
63
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
12
July, 2019
10
November, 2020
7
November, 2018
February, 2021
3
August, 2017
Available data
41
zippedFastqFolder
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
8
fastq
Organism
73
Homo sapiens
Biosample type
41
primary cell
25
tissue
7
cell line
Organ
55
pancreas
47
epithelium
8
heart
6
adipose tissue
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
41
HPAP
32
AMP
Genome assembly (visualization)
15
GRCh38
Lab
41
Klaus Kaestner, Upenn
22
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
connective tissue
month_released!
February, 2021
BIOSAMPLE
ASSAY
73 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
liver
3
aorta
2
body of pancreas
2
+ See 7 more…
cell line
EndoC_BH1
6
HepG2
1
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