Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1765
ChIP-seq
1526
total RNA-seq
523
ATAC-seq
363
single cell RNA-seq
176
DNase-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
57
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
74
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
11
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
6
February, 2021
Available data
41
zippedFastqFolder
17
bam
17
fastq
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
Organism
84
Homo sapiens
Biosample type
47
primary cell
30
tissue
7
cell line
Organ
61
pancreas
53
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
limb
1
musculature of body
Project
47
HPAP
37
AMP
Genome assembly (visualization)
16
GRCh38
Lab
47
Klaus Kaestner, Upenn
27
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
limb
assay_title!
MPRA
BIOSAMPLE
ASSAY
84 results
search-icon
table-tab-icon
Clear Filters
WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 8 more…
cell line
EndoC_BH1
6
HepG2
1
See all biosamples
Download