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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ATAC-seq
361
ChIP-seq
262
single cell RNA-seq
219
total RNA-seq
87
RNA microarray
84
snATAC-seq
54
WGBS
54
pCHi-C
26
Hi-C
19
RRBS
10
MeRIP-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
54
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
November, 2020
6
February, 2021
4
August, 2017
3
July, 2019
Available data
41
zippedFastqFolder
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
bigWig
15
fastq
6
tsv
Organism
64
Homo sapiens
Biosample type
47
primary cell
11
tissue
6
cell line
Organ
57
pancreas
53
epithelium
4
adipose tissue
4
connective tissue
liver
2
heart
1
blood vessel
1
vasculature
Project
47
HPAP
17
AMP
Lab
47
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
7
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
liver
files.file_type!
bigWig
BIOSAMPLE
ASSAY
64 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
islet of Langerhans
4
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
aorta
1
cell line
EndoC_BH1
6
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