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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
355
ATAC-seq
271
ChIP-seq
262
single cell RNA-seq
243
total RNA-seq
87
RNA microarray
83
snATAC-seq
57
WGBS
55
pCHi-C
28
Hi-C
16
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
57
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
November, 2020
7
August, 2017
6
February, 2021
4
August, 2021
3
July, 2019
Available data
41
zippedFastqFolder
bam
17
fastq
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
2
bed bed3+
Organism
71
Homo sapiens
Biosample type
47
primary cell
14
tissue
8
cell line
2
in vitro differentiated cells
Organ
59
pancreas
55
epithelium
6
connective tissue
4
adipose tissue
4
liver
2
heart
Project
47
HPAP
24
AMP
Genome assembly (visualization)
2
hg19
Lab
47
Klaus Kaestner, Upenn
12
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
Audit category:
8
inconsistent ontology term
organ_slims!
musculature of body
files.file_type!
bam
BIOSAMPLE
ASSAY
71 results
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WGBS
MeRIP-seq
Capture-C
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
islet of Langerhans
4
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
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cell line
EndoC_BH1
6
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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