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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
579
ChIP-seq
296
ATAC-seq
262
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
58
WGBS
56
pCHi-C
26
Hi-C
16
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
58
DNA methylation
5
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
November, 2020
8
August, 2017
6
February, 2021
6
July, 2019
1
November, 2018
1
October, 2019
Available data
41
zippedFastqFolder
10
fastq
6
bam
6
tsv
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
1
tar
Organism
73
Homo sapiens
Biosample type
48
primary cell
19
tissue
6
cell line
Organ
59
pancreas
54
epithelium
4
adipose tissue
4
connective tissue
4
liver
2
blood vessel
2
heart
2
vasculature
1
brain
1
kidney
1
vein
Project
47
HPAP
26
AMP
Genome assembly (visualization)
GRCh38
5
hg19
Lab
47
Klaus Kaestner, Upenn
16
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
musculature of body
assembly!
GRCh38
BIOSAMPLE
ASSAY
73 results
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WGBS
MeRIP-seq
FAIRE-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
endothelial cell of umbilical vein
1
tissue
islet of Langerhans
4
1
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
+ See 5 more…
cell line
EndoC_BH1
6
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