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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
982
total RNA-seq
508
ATAC-seq
344
single cell RNA-seq
179
DNase-seq
68
WGBS
56
snATAC-seq
54
pCHi-C
28
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
68
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
11
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
February, 2021
Available data
41
zippedFastqFolder
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
11
fastq
Organism
78
Homo sapiens
Biosample type
41
primary cell
30
tissue
7
cell line
Organ
55
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
musculature of body
Project
41
HPAP
37
AMP
Genome assembly (visualization)
16
GRCh38
Lab
41
Klaus Kaestner, Upenn
27
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
musculature of body
month_released!
February, 2021
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
78 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 8 more…
cell line
EndoC_BH1
6
HepG2
1
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