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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
946
ChIP-seq
394
total RNA-seq
257
ATAC-seq
177
single cell RNA-seq
42
WGBS
33
DNase-seq
30
pCHi-C
29
snATAC-seq
18
Hi-C
9
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
small RNA-seq
1
whole genome sequencing assay
Assay category
42
DNA methylation
Target of assay
3
control
3
nucleotide modification
Date released
41
May, 2022
February, 2021
6
November, 2020
1
November, 2018
Available data
41
zippedFastqFolder
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
1
fastq
Organism
48
Homo sapiens
Biosample type
41
primary cell
tissue
7
cell line
Organ
47
epithelium
47
pancreas
1
liver
Project
41
HPAP
7
AMP
Genome assembly (visualization)
1
GRCh38
Lab
41
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
1
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
musculature of body
month_released!
February, 2021
biosample_type!
tissue
BIOSAMPLE
ASSAY
48 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
cell line
EndoC_BH1
6
HepG2
1
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