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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1824
ChIP-seq
982
total RNA-seq
508
ATAC-seq
344
single cell RNA-seq
179
DNase-seq
56
snATAC-seq
54
pCHi-C
52
WGBS
28
Hi-C
16
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
52
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
November, 2020
7
August, 2017
February, 2021
4
July, 2019
Available data
41
zippedFastqFolder
17
bam
16
bed bedMethyl
bigBed bedMethyl
16
bigWig
11
fastq
Organism
62
Homo sapiens
Biosample type
41
primary cell
15
tissue
6
cell line
Organ
51
pancreas
47
epithelium
4
adipose tissue
4
connective tissue
4
liver
2
heart
1
blood vessel
1
vasculature
Project
41
HPAP
21
AMP
Lab
41
Klaus Kaestner, Upenn
11
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
musculature of body
month_released!
February, 2021
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
62 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
islet of Langerhans
4
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
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cell line
EndoC_BH1
6
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