Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
188
ATAC-seq
140
single cell RNA-seq
55
snATAC-seq
41
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
41
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
November, 2020
February, 2021
Available data
41
zippedFastqFolder
Organism
51
Homo sapiens
Biosample type
41
primary cell
6
cell line
4
tissue
Organ
51
pancreas
47
epithelium
Project
41
HPAP
10
AMP
Lab
41
Klaus Kaestner, Upenn
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
musculature of body
month_released!
February, 2021
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
51 results
search-icon
table-tab-icon
Clear Filters
WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
Download