Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1804
ChIP-seq
982
total RNA-seq
507
ATAC-seq
344
single cell RNA-seq
178
DNase-seq
66
WGBS
56
snATAC-seq
53
pCHi-C
28
Hi-C
16
RRBS
16
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
66
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
11
July, 2019
10
November, 2020
9
August, 2017
February, 2021
5
November, 2018
Available data
41
zippedFastqFolder
15
bam
14
bed bedMethyl
14
bigBed bedMethyl
14
bigWig
9
fastq
Organism
76
Homo sapiens
Biosample type
41
primary cell
28
tissue
7
cell line
Organ
55
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
spleen
2
vasculature
1
limb
musculature of body
Project
41
HPAP
35
AMP
Genome assembly (visualization)
14
GRCh38
Lab
41
Klaus Kaestner, Upenn
25
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
organ_slims!
musculature of body
spleen
month_released!
February, 2021
BIOSAMPLE
ASSAY
76 results
search-icon
table-tab-icon
Clear Filters
WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 7 more…
cell line
EndoC_BH1
6
HepG2
1
See all biosamples
Download