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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1703
ChIP-seq
1396
total RNA-seq
427
ATAC-seq
292
single cell RNA-seq
160
DNase-seq
86
RNA microarray
83
snATAC-seq
56
pCHi-C
27
WGBS
20
Hi-C
16
small RNA-seq
10
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
27
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
11
July, 2019
9
August, 2017
7
November, 2018
4
November, 2020
Available data
17
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
11
fastq
Organism
31
Homo sapiens
Biosample type
30
tissue
1
cell line
Organ
61
pancreas
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
musculature of body
Project
31
AMP
Genome assembly (visualization)
16
GRCh38
Lab
27
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
musculature of body
epithelium
BIOSAMPLE
ASSAY
31 results
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WGBS
MeRIP-seq
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 8 more…
cell line
HepG2
1
See all biosamples
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