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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1682
ChIP-seq
1402
total RNA-seq
427
ATAC-seq
293
single cell RNA-seq
192
DNase-seq
86
RNA microarray
84
snATAC-seq
56
pCHi-C
26
Hi-C
26
WGBS
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
26
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
12
July, 2019
9
August, 2017
5
November, 2018
4
November, 2020
Available data
16
bam
15
bed bedMethyl
15
bigBed bedMethyl
15
bigWig
9
fastq
Organism
30
Homo sapiens
Biosample type
29
tissue
1
cell line
Organ
61
pancreas
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
spleen
2
vasculature
1
limb
1
musculature of body
Project
30
AMP
Genome assembly (visualization)
15
GRCh38
Lab
26
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
spleen
epithelium
BIOSAMPLE
ASSAY
30 results
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WGBS
MeRIP-seq
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 8 more…
cell line
HepG2
1
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