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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
51
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
November, 2020
6
February, 2021
4
November, 2018
Available data
41
zippedFastqFolder
10
fastq
6
tsv
4
bam
4
bed bedMethyl
4
bigBed bedMethyl
4
bigWig
Organism
61
Homo sapiens
Biosample type
47
primary cell
8
tissue
6
cell line
Organ
61
pancreas
53
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
14
AMP
Genome assembly (visualization)
4
GRCh38
Lab
47
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
4
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
spleen
BIOSAMPLE
ASSAY
61 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
islet of Langerhans
4
body of pancreas
2
pancreas
2
cell line
EndoC_BH1
6
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