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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
223
ChIP-seq
202
total RNA-seq
163
single cell RNA-seq
150
ATAC-seq
55
WGBS
49
DNase-seq
11
Hi-C
8
RRBS
6
MeRIP-seq
3
pCHi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
1
small RNA-seq
Assay category
55
DNA methylation
Target of assay
3
control
3
nucleotide modification
Date released
41
May, 2022
8
July, 2019
6
February, 2021
6
November, 2020
Available data
41
zippedFastqFolder
6
bam
6
bed bedMethyl
6
bigBed bedMethyl
6
bigWig
6
fastq
6
tsv
Organism
61
Homo sapiens
Biosample type
47
primary cell
8
tissue
6
cell line
Organ
61
pancreas
53
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
14
AMP
Genome assembly (visualization)
6
GRCh38
Lab
47
Klaus Kaestner, Upenn
8
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
BIOSAMPLE
ASSAY
61 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
heart right ventricle
2
heart
1
right cardiac atrium
1
cell line
EndoC_BH1
6
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