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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
200
ChIP-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
8
Hi-C
5
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
47
DNA methylation
Target of assay
control
5
nucleotide modification
Date released
41
May, 2022
6
February, 2021
5
November, 2020
Available data
41
zippedFastqFolder
6
fastq
6
tsv
Organism
52
Homo sapiens
Biosample type
47
primary cell
3
cell line
2
tissue
Organ
52
pancreas
50
epithelium
Project
47
HPAP
5
AMP
Lab
47
Klaus Kaestner, Upenn
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
target.investigated_as!
control
assay_title!
CRISPR RNA-seq
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
52 results
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WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cell line
EndoC_BH1
3
tissue
islet of Langerhans
2
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