Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1533
total RNA-seq
1496
ChIP-seq
492
ATAC-seq
308
single cell RNA-seq
212
DNase-seq
87
RNA microarray
63
snATAC-seq
57
pCHi-C
34
Hi-C
34
WGBS
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
34
DNA methylation
Target of assay
control
5
nucleotide modification
Date released
12
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
5
November, 2020
Available data
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
6
tsv
Organism
39
Homo sapiens
Biosample type
29
tissue
6
primary cell
4
cell line
Organ
15
pancreas
9
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
33
AMP
6
HPAP
Genome assembly (visualization)
17
GRCh38
Lab
28
AMP-T2D consortium
6
Klaus Kaestner, Upenn
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
target.investigated_as!
control
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
39 results
search-icon
table-tab-icon
Clear Filters
WGBS
MeRIP-seq
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 9 more…
primary cell
pancreatic alpha cell
6
cell line
EndoC_BH1
3
HepG2
1
See all biosamples
Download