Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1496
ChIP-seq
1489
total RNA-seq
525
ATAC-seq
360
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
57
pCHi-C
26
Hi-C
6
RRBS
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
63
DNA methylation
Target of assay
control
5
nucleotide modification
Date released
41
May, 2022
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
5
November, 2020
Available data
41
zippedFastqFolder
17
fastq
9
bam
9
bed bedMethyl
9
bigBed bedMethyl
9
bigWig
6
tsv
Organism
68
Homo sapiens
Biosample type
47
primary cell
17
tissue
4
cell line
Organ
56
pancreas
50
epithelium
6
adipose tissue
6
connective tissue
4
liver
2
spleen
Project
47
HPAP
21
AMP
Genome assembly (visualization)
9
GRCh38
Lab
47
Klaus Kaestner, Upenn
16
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
target.investigated_as!
control
month_released!
July, 2019
BIOSAMPLE
ASSAY
68 results
search-icon
table-tab-icon
Clear Filters
WGBS
MeRIP-seq
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
islet of Langerhans
2
+ See 2 more…
cell line
EndoC_BH1
3
HepG2
1
See all biosamples
Download