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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1831ChIP-seq
  • 1532total RNA-seq
  • 520ATAC-seq
  • 313single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 313Transcription
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 106August, 2021
  • 48July, 2018
  • 43April, 2018
  • 40September, 2020
  • 34May, 2022
  • 18February, 2021
  • 10November, 2020
  • 9April, 2020
  • 3August, 2018
  • 3December, 2019
  • 3July, 2019
  • 3June, 2018
  • 1February, 2023
  • 1November, 2018
  • 1September, 2018
Available data
  • 205tsv
  • 128fastq
  • 100bam
  • 100bigWig
  • 52zippedFastqFolder
  • 13txt
  • 8csv
Organism
  • 323Homo sapiens
Biosample type
  • 187primary cell
  • 128tissue
  • 6cell line
  • 2in vitro differentiated cells
Organ
  • 93heart
  • 84pancreas
  • 76epithelium
  • 14kidney
  • 9lung
  • 6blood vessel
  • 6vasculature
  • 4connective tissue
  • 3brain
  • 2artery
  • 1liver
  • 1musculature of body
Project
  • 229AMP
  • 85HPAP
  • 9LungMap
Genome assembly (visualization)
  • 100GRCh38
  • 100hg19
Lab
  • 211AMP-T2D consortium
  • 85Klaus Kaestner, Upenn
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
  • 8Katalin Susztak, Upenn
Audit category:
  • 15inconsistent ontology term
  • 7audit script error
BIOSAMPLE
ASSAY

323 results

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Clear Filters
single cell RNA-seq
MeRIP-seq
primary cell
Langerhans cell85
pancreatic acinar cell12
pancreatic alpha cell12
pancreatic beta cell12
pancreatic delta cell11
tissue
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
kidney14
cell line
EndoC_BH16
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
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