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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1645
ChIP-seq
611
total RNA-seq
357
ATAC-seq
271
single cell RNA-seq
204
DNase-seq
54
pCHi-C
46
snATAC-seq
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
RNA microarray
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
siRNA RNA-seq
1
whole genome sequencing assay
0
MeRIP-seq
Assay category
271
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
February, 2021
11
July, 2018
10
April, 2018
9
April, 2020
3
December, 2019
3
July, 2019
3
May, 2023
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
126
tsv
52
zippedFastqFolder
47
fastq
26
bam
26
bigWig
8
txt
2
csv
Organism
271
Homo sapiens
Biosample type
168
tissue
101
primary cell
2
in vitro differentiated cells
Organ
93
heart
pancreas
76
epithelium
59
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
musculature of body
Project
142
AMP
73
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
131
AMP-T2D consortium
73
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
4
inconsistent ontology term
2
audit script error
assay_title!
siRNA RNA-seq
month_released!
February, 2021
organ_slims!
pancreas
BIOSAMPLE
ASSAY
271 results
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single cell RNA-seq
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
primary cell
Langerhans cell
73
pancreatic cell
9
mesenchymal cell
6
cerebellar granule cell
2
endothelial cell
2
+ See 5 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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