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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
92
total RNA-seq
91
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
FAIRE-seq
1
RNA microarray
Assay category
91
DNA accessibility
70
Transcription
Target of assay
3
control
3
nucleotide modification
Date released
39
May, 2022
33
April, 2018
33
July, 2018
16
May, 2021
14
September, 2018
February, 2023
7
August, 2020
6
November, 2020
5
September, 2017
3
August, 2017
3
August, 2018
3
September, 2020
2
March, 2020
1
June, 2018
1
November, 2019
1
October, 2019
Available data
104
bigWig
98
fastq
94
bam
71
tsv
39
zippedFastqFolder
24
bed narrowPeak
22
bigBed narrowPeak
Organism
167
Homo sapiens
Biosample type
142
primary cell
25
cell line
Organ
225
pancreas
167
epithelium
139
kidney
104
heart
24
liver
19
connective tissue
17
blood vessel
17
vasculature
12
artery
9
lung
8
bone element
8
limb
8
skeleton
6
brain
5
adipose tissue
2
musculature of body
1
blood
1
bodily fluid
1
eye
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
118
AMP
49
HPAP
Genome assembly (visualization)
104
GRCh38
96
hg19
Lab
112
AMP-T2D consortium
49
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
167 results
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ATAC-seq
single cell RNA-seq
MeRIP-seq
primary cell
pancreatic alpha cell
35
12
pancreatic beta cell
23
12
pancreatic acinar cell
9
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
19
6
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