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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
907
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
260
DNA accessibility
174
Transcription
Target of assay
2
control
2
nucleotide modification
Date released
170
August, 2021
80
February, 2023
47
September, 2023
39
May, 2022
20
November, 2019
16
October, 2019
14
February, 2021
14
May, 2023
9
April, 2020
8
October, 2017
6
July, 2019
4
March, 2019
4
November, 2020
2
August, 2017
2
January, 2018
2
March, 2020
1
December, 2019
Available data
208
bed narrowPeak
104
tsv
64
bam
64
xls
43
bigWig
29
fastq
13
txt
6
csv
5
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
Organism
438
Homo sapiens
Biosample type
438
tissue
387
primary cell
44
in vitro differentiated cells
34
cell line
Organ
139
kidney
132
heart
66
pancreas
44
blood vessel
44
vasculature
39
artery
28
eye
22
liver
12
bone element
12
epithelium
12
skeleton
9
lung
8
limb
6
adipose tissue
6
connective tissue
4
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
371
AMP
47
KPMP
11
T1D
9
LungMap
Genome assembly (visualization)
158
GRCh38
122
hg19
Lab
238
AMP-T2D consortium
86
Katalin Susztak, Upenn
47
KPMP
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
audit script error
1
inconsistent ontology term
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
438 results
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ATAC-seq
single cell RNA-seq
MeRIP-seq
tissue
kidney
75
64
islet of Langerhans
68
4
coronary artery
36
liver
20
1
heart left ventricle
2
18
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