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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
531
ATAC-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
0
CRISPRi RNA-seq
0
single cell RNA-seq
Assay category
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
84
February, 2021
10
November, 2020
2
December, 2019
1
August, 2021
Available data
84
txt
2
tsv
Organism
96
Homo sapiens
Biosample type
91
tissue
6
cell line
Organ
84
bone element
10
pancreas
7
epithelium
2
kidney
1
adipose tissue
1
connective tissue
Project
97
AMP
Lab
87
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
90
inconsistent ontology term
2
audit script error
assay_slims!
Transcription
BIOSAMPLE
ASSAY
97 results
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RNA microarray
MeRIP-seq
tissue
bone element
84
islet of Langerhans
4
kidney interstitium
1
renal glomerulus
1
subcutaneous adipose tissue
1
cell line
EndoC_BH1
6
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